4P6E	Crystal Structure of Human Cathepsin S Bound to a Non-covalent Inhibitor	date
authors	Wang, Y., Jadhav, P.K., Deng, G.G.
compound		source
symmetry		R_factor R_Free 0.19914
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	1.80
ligand	2FC, SO4	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Discovery of Cathepsin S Inhibitor LY3000328 for the Treatment of Abdominal Aortic Aneurysm., Jadhav PK, Schiffler MA, Gavardinas K, Kim EJ, Matthews DP, Staszak MA, Coffey DS, Shaw BW, Cassidy KC, Brier RA, Zhang Y, Christie RM, Matter WF, Qing K, Durbin JD, Wang Y, Deng GG, ACS Med Chem Lett. 2014 Aug 27;5(10):1138-42. doi: 10.1021/ml500283g. eCollection, 2014 Oct 9. PMID:25313327

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk] Biological Unit Coordinates (4p6e.pdb1.gz) 40 Kb Biological Unit Coordinates (4p6e.pdb2.gz) 39 Kb Biological Unit Coordinates (4p6e.pdb3.gz) 78 Kb LPC: Ligand-Protein Contacts for 4P6E CSU: Contacts of Structural Units for 4P6E Structure Factors (514 Kb) Retrieve 4P6E in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4P6E from S2C, [Save to disk] Re-refined 4p6e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4P6E in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4P6E

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4P6E, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4p6e_B] [4p6e_A] [4p6e] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4P6E: [Pept_C1 ] by SMART

Other resources with information on 4P6E

Community annotation for 4P6E at PDBWiki (http://pdbwiki.org)

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