4P96 FadR, Fatty Acid Responsive Transcription Factor from Vibrio cholerae date
authors Shi, W., Kull, F.J.
compound source
symmetry
R_factor
R_Free 0.2046
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.20
Gene VCHC21A1
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe 40-residue insertion in Vibrio cholerae FadR facilitates binding of an additional fatty acyl-CoA ligand., Shi W, Kovacikova G, Lin W, Taylor RK, Skorupski K, Kull FJ, Nat Commun. 2015 Jan 21;6:6032. doi: 10.1038/ncomms7032. PMID:25607896
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (102 Kb) [Save to disk]
  • Biological Unit Coordinates (4p96.pdb1.gz) 97 Kb
  • CSU: Contacts of Structural Units for 4P96
  • Structure Factors (547 Kb)
  • Retrieve 4P96 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4P96 from S2C, [Save to disk]
  • Re-refined 4p96 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4P96 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4P96
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4P96, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4p96_A] [4p96_B] [4p96]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4P96: [HTH_GNTR ] by SMART
  • Other resources with information on 4P96
  • Community annotation for 4P96 at PDBWiki (http://pdbwiki.org)

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