4P9M Crystal structure of 8ANC195 Fab date
authors Scharf, L., Bjorkman, P.J.
compound source
symmetry
R_factor
R_Free 0.239
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.13
ligand NAG enzyme
Primary referenceAntibody 8ANC195 Reveals a Site of Broad Vulnerability on the HIV-1 Envelope Spike., Scharf L, Scheid JF, Lee JH, West AP Jr, Chen C, Gao H, Gnanapragasam PN, Mares R, Seaman MS, Ward AB, Nussenzweig MC, Bjorkman PJ, Cell Rep. 2014 May 8;7(3):785-95. doi: 10.1016/j.celrep.2014.04.001. Epub 2014, Apr 24. PMID:24767986
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (4p9m.pdb1.gz) 70 Kb
  • LPC: Ligand-Protein Contacts for 4P9M
  • CSU: Contacts of Structural Units for 4P9M
  • Structure Factors (279 Kb)
  • Retrieve 4P9M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4P9M from S2C, [Save to disk]
  • Re-refined 4p9m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4P9M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4P9M
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4P9M, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4p9m_L] [4p9m] [4p9m_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4P9M: [IG_like] [IGv ] by SMART
    • Other resources with information on 4P9M
  • Community annotation for 4P9M at PDBWiki (http://pdbwiki.org)

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