4PCZ Crystal structure of a complex between R247G LlFPG mutant and a THF containing DNA date
authors Coste, F., Castaing, B.
compound source
symmetry
R_factor
R_Free 0.1815
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.70
ligand 3DR, GOL, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceZinc finger oxidation of Fpg/Nei DNA glycosylases by 2-thioxanthine: biochemical and X-ray structural characterization., Biela A, Coste F, Culard F, Guerin M, Goffinont S, Gasteiger K, Ciesla J, Winczura A, Kazimierczuk Z, Gasparutto D, Carell T, Tudek B, Castaing B, Nucleic Acids Res. 2014;42(16):10748-61. doi: 10.1093/nar/gku613. Epub 2014 Aug, 20. PMID:25143530
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (127 Kb) [Save to disk]
  • Biological Unit Coordinates (4pcz.pdb1.gz) 120 Kb
  • LPC: Ligand-Protein Contacts for 4PCZ
  • CSU: Contacts of Structural Units for 4PCZ
  • Structure Factors (3400 Kb)
  • Retrieve 4PCZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4PCZ from S2C, [Save to disk]
  • Re-refined 4pcz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4PCZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4PCZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4PCZ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4pcz] [4pcz_B] [4pcz_A] [4pcz_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4PCZ: [Fapy_DNA_glyco] [H2TH ] by SMART
    • Other resources with information on 4PCZ
  • Community annotation for 4PCZ at PDBWiki (http://pdbwiki.org)

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