4PEE Crystal structure of a bacterial fucosidase with inhibitor 1-phenyl-4-[(2S,3S,4R,5S)-3,4-dihydroxy-5-methylpyrrolidin-2-yl]triazole date
authors Wright, D.W., Davies, G.J., Behr, J.B.
compound source
symmetry
R_factor
R_Free 0.2290
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.95
ligand 2OX, IMD, SO4 enzyme
Gene BT
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceExploiting the Hydrophobic Terrain in Fucosidases with Aryl-Substituted Pyrrolidine Iminosugars., Hottin A, Wright DW, Davies GJ, Behr JB, Chembiochem. 2014 Nov 26. doi: 10.1002/cbic.201402509. PMID:25427942
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (308 Kb) [Save to disk]
  • Biological Unit Coordinates (4pee.pdb1.gz) 78 Kb
  • Biological Unit Coordinates (4pee.pdb2.gz) 80 Kb
  • Biological Unit Coordinates (4pee.pdb3.gz) 79 Kb
  • Biological Unit Coordinates (4pee.pdb4.gz) 78 Kb
  • LPC: Ligand-Protein Contacts for 4PEE
  • CSU: Contacts of Structural Units for 4PEE
  • Structure Factors (8068 Kb)
  • Retrieve 4PEE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4PEE from S2C, [Save to disk]
  • Re-refined 4pee structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4PEE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4PEE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4PEE, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4pee_C] [4pee_D] [4pee] [4pee_A] [4pee_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4PEE: [Alpha_L_fucos ] by SMART
  • Other resources with information on 4PEE
  • Community annotation for 4PEE at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science