4PEH	Dbr1 in complex with synthetic linear RNA	date
authors	Montemayor, E.J., Katolik, A., Clark, N.E., Taylor, A.B., Schuermann, J.P., Combs, D.J., Johnsson, R., Holloway, S.P., Stevens, S.W., Damha, M.J., Hart, P.J.
compound		source
symmetry		R_factor R_Free 0.2471
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.10
ligand	A2P, GOL, MN, SO4	enzyme
Gene	EHI
Gene Ontology	Chain Function Process Component A, D, C, E, B RNA lariat debranching enzym...
Primary reference	Structural basis of lariat RNA recognition by the intron debranching enzyme Dbr1., Montemayor EJ, Katolik A, Clark NE, Taylor AB, Schuermann JP, Combs DJ, Johnsson R, Holloway SP, Stevens SW, Damha MJ, Hart PJ, Nucleic Acids Res. 2014 Aug 14. pii: gku725. PMID:25123664

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (320 Kb) [Save to disk] Biological Unit Coordinates (4peh.pdb1.gz) 66 Kb Biological Unit Coordinates (4peh.pdb2.gz) 67 Kb Biological Unit Coordinates (4peh.pdb3.gz) 68 Kb Biological Unit Coordinates (4peh.pdb4.gz) 67 Kb Biological Unit Coordinates (4peh.pdb5.gz) 66 Kb LPC: Ligand-Protein Contacts for 4PEH CSU: Contacts of Structural Units for 4PEH Structure Factors (2425 Kb) Retrieve 4PEH in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4PEH from S2C, [Save to disk] Re-refined 4peh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4PEH in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4PEH

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4PEH, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4peh_C] [4peh_Y] [4peh_W] [4peh_Z] [4peh_D] [4peh_A] [4peh_X] [4peh] [4peh_E] [4peh_V] [4peh_B] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 4PEH

Community annotation for 4PEH at PDBWiki (http://pdbwiki.org)

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