4PEZ Structure of the E502A variant of sacteLam55A from Streptomyces sp. SirexAA-E in complex with laminaritetraose date
authors Bianchetti, C.M., Takasuka, T.E., Yik, E.J., Bergeman, L.F., Fox, B.G.
compound source
symmetry
R_factor
R_Free 0.169
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand BGC, EDO enzyme
Gene SACTE
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceActive site and laminarin binding in glycoside hydrolase family 55., Bianchetti CM, Takasuka TE, Deutsch S, Udell HS, Yik EJ, Bergeman LF, Fox BG, J Biol Chem. 2015 Mar 9. pii: jbc.M114.623579. PMID:25752603
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (99 Kb) [Save to disk]
  • Biological Unit Coordinates (4pez.pdb1.gz) 94 Kb
  • LPC: Ligand-Protein Contacts for 4PEZ
  • CSU: Contacts of Structural Units for 4PEZ
  • Structure Factors (904 Kb)
  • Retrieve 4PEZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4PEZ from S2C, [Save to disk]
  • Re-refined 4pez structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4PEZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4PEZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4PEZ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4pez] [4pez_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4PEZ
  • Community annotation for 4PEZ at PDBWiki (http://pdbwiki.org)

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