4PH4	The crystal structure of Human VPS34 in complex with PIK-III	date
authors	Knapp, M.S., Elling, R.A.
compound		source
symmetry		R_factor R_Free 0.2232
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.80
ligand	2UG, GOL	enzyme
Gene Ontology	Chain Function Process Component B
Primary reference	Selective VPS34 inhibitor blocks autophagy and uncovers a role for NCOA4 in ferritin degradation and iron homeostasis in vivo., Dowdle WE, Nyfeler B, Nagel J, Elling RA, Liu S, Triantafellow E, Menon S, Wang Z, Honda A, Pardee G, Cantwell J, Luu C, Cornella-Taracido I, Harrington E, Fekkes P, Lei H, Fang Q, Digan ME, Burdick D, Powers AF, Helliwell SB, D'Aquin S, Bastien J, Wang H, Wiederschain D, Kuerth J, Bergman P, Schwalb D, Thomas J, Ugwonali S, Harbinski F, Tallarico J, Wilson CJ, Myer VE, Porter JA, Bussiere DE, Finan PM, Labow MA, Mao X, Hamann LG, Manning BD, Valdez RA, Nicholson T, Schirle M, Knapp MS, Keaney EP, Murphy LO, Nat Cell Biol. 2014 Nov;16(11):1069-79. doi: 10.1038/ncb3053. Epub 2014 Oct 19. PMID:25327288

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (135 Kb) [Save to disk] Biological Unit Coordinates (4ph4.pdb1.gz) 129 Kb LPC: Ligand-Protein Contacts for 4PH4 CSU: Contacts of Structural Units for 4PH4 Structure Factors (502 Kb) Retrieve 4PH4 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4PH4 from S2C, [Save to disk] Re-refined 4ph4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4PH4 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4PH4

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4PH4, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4ph4] [4ph4_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 4PH4: [PI3Ka] [PI3Kc ] by SMART

Other resources with information on 4PH4

Community annotation for 4PH4 at PDBWiki (http://pdbwiki.org)

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