4PHU Crystal structure of Human GPR40 bound to allosteric agonist TAK-875 date
authors Srivastava, A., Yano, J.K., Hirozane, Y., Kefala, G., Snell, G., Lane, W., Gruswitz, F., Ivetac, A., Aertgeerts, K., Nguyen, J., Jennings, A., Okada, K.
compound source
symmetry
R_factor
R_Free 0.2331
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.33
ligand 1PE, 2YB, DMS, OLC enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceHigh-resolution structure of the human GPR40 receptor bound to allosteric agonist TAK-875., Srivastava A, Yano J, Hirozane Y, Kefala G, Gruswitz F, Snell G, Lane W, Ivetac A, Aertgeerts K, Nguyen J, Jennings A, Okada K, Nature. 2014 Jul 20. doi: 10.1038/nature13494. PMID:25043059
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (146 Kb) [Save to disk]
  • Biological Unit Coordinates (4phu.pdb1.gz) 139 Kb
  • LPC: Ligand-Protein Contacts for 4PHU
  • CSU: Contacts of Structural Units for 4PHU
  • Structure Factors (484 Kb)
  • Retrieve 4PHU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4PHU from S2C, [Save to disk]
  • Re-refined 4phu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4PHU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4PHU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4PHU, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4phu_A] [4phu]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4PHU
  • Community annotation for 4PHU at PDBWiki (http://pdbwiki.org)

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