4PHW Crystal Structure of PDE10A with 1H-benzimidazol-2-yl(4-((3-(tetrahydro-2H-pyran-4-yl)-2-pyridinyl)oxy)phenyl)methanone date
authors Chmait, S.
compound source
symmetry
R_factor
R_Free 0.18048
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.50
ligand 2W1, SO4, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDiscovery of Clinical Candidate 1-(4-(3-(4-(1H-Benzo[d]imidazole-2-carbonyl)phenoxy)pyrazin-2-yl)piperidin-1-yl)e thanone (AMG 579), A Potent, Selective, and Efficacious Inhibitor of Phosphodiesterase 10A (PDE10A)., Hu E, Chen N, Bourbeau MP, Harrington PE, Biswas K, Kunz RK, Andrews KL, Chmait S, Zhao X, Davis C, Ma J, Shi J, Lester-Zeiner D, Danao J, Able J, Cueva M, Talreja S, Kornecook T, Chen H, Porter A, Hungate R, Treanor J, Allen JR, J Med Chem. 2014 Aug 4. PMID:25062128
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (208 Kb) [Save to disk]
  • Biological Unit Coordinates (4phw.pdb1.gz) 200 Kb
  • Biological Unit Coordinates (4phw.pdb2.gz) 595 Kb
  • LPC: Ligand-Protein Contacts for 4PHW
  • CSU: Contacts of Structural Units for 4PHW
  • Structure Factors (866 Kb)
  • Retrieve 4PHW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4PHW from S2C, [Save to disk]
  • Re-refined 4phw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4PHW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4PHW
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4PHW, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4phw_A] [4phw_B] [4phw]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4PHW: [HDc ] by SMART
    • Other resources with information on 4PHW
  • Community annotation for 4PHW at PDBWiki (http://pdbwiki.org)

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