4PKN Crystal structure of the football-shaped GroEL-GroES2-(ADPBeFx)14 complex containing substrate Rubisco date
authors Fei, X., Ye, X., Laronde-Leblanc, N., Lorimer, G.H.
compound source
symmetry
R_factor
R_Free 0.2410
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.66
ligand ADP, BEF, K, MG enzyme
Gene BN17 ; BN17 ; BU34 ; BU34 ; LF82 ; LF82
Gene
Ontology
ChainFunctionProcessComponent
F, N, K, E, M, C, L, A, J, B, H, D, I, G


S, T, Y, 2, V, Z, Q, 1, O, W, X, P, R, U


Primary referenceFormation and structures of GroEL:GroES2 chaperonin footballs, the protein-folding functional form., Fei X, Ye X, LaRonde NA, Lorimer GH, Proc Natl Acad Sci U S A. 2014 Aug 18. pii: 201412922. PMID:25136110
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2755 Kb) [Save to disk]
  • Biological Unit Coordinates (4pkn.pdb1.gz) 2725 Kb
  • LPC: Ligand-Protein Contacts for 4PKN
  • CSU: Contacts of Structural Units for 4PKN
  • Structure Factors (2293 Kb)
  • Retrieve 4PKN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4PKN from S2C, [Save to disk]
  • Re-refined 4pkn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4PKN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4PKN
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4PKN, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4pkn_2] [4pkn_M] [4pkn_B] [4pkn_L] [4pkn_S] [4pkn_A] [4pkn_Y] [4pkn_Q] [4pkn_Z] [4pkn_1] [4pkn_N] [4pkn_W] [4pkn_P] [4pkn] [4pkn_D] [4pkn_V] [4pkn_F] [4pkn_E] [4pkn_G] [4pkn_K] [4pkn_X] [4pkn_J] [4pkn_O] [4pkn_H] [4pkn_U] [4pkn_C] [4pkn_R] [4pkn_T] [4pkn_I]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4PKN: [Cpn10 ] by SMART
    • Other resources with information on 4PKN
  • Community annotation for 4PKN at PDBWiki (http://pdbwiki.org)

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