4PP8 Crystal structure of murine NK cell ligand RAE-1 beta in complex with NKG2D date 2014-02-26
authors Li, P., Strong, R.K.
compound source
symmetry
R_factor
R_Free 0.21720
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.95
ligand GOL enzyme
note 4PP8 supersedes 1JSK
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structures of RAE-1beta and its complex with the activating immunoreceptor NKG2D., Li P, McDermott G, Strong RK, Immunity. 2002 Jan;16(1):77-86. PMID:11825567
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (192 Kb) [Save to disk]
  • Biological Unit Coordinates (4pp8.pdb1.gz) 186 Kb
  • LPC: Ligand-Protein Contacts for 4PP8
  • CSU: Contacts of Structural Units for 4PP8
  • Structure Factors (1333 Kb)
  • Retrieve 4PP8 in mmCIF format [Save to disk]
  • Re-refined 4pp8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4PP8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4PP8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4PP8, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4pp8_B] [4pp8_C] [4pp8_A] [4pp8] [4pp8_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4PP8: [CLECT ] by SMART
  • Other resources with information on 4PP8
  • Community annotation for 4PP8 at PDBWiki (http://pdbwiki.org)

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