4PU3 Shewanella oneidensis MR-1 Toxin Antitoxin System HipA, HipB and its operator DNA complex (space group P212121) date
authors Wen, Y., Behiels, E., Felix, J., Elegheert, J., Vergauwen, B., Devreese, B., Savvides, S.
compound source
symmetry
R_factor
R_Free 0.3154
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.39
ligand SEP enzyme
Gene SO ; SO
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • protein serine/threonine kin...


    • D, C


    Primary referenceThe bacterial antitoxin HipB establishes a ternary complex with operator DNA and phosphorylated toxin HipA to regulate bacterial persistence., Wen Y, Behiels E, Felix J, Elegheert J, Vergauwen B, Devreese B, Savvides SN, Nucleic Acids Res. 2014 Jul 23. pii: gku665. PMID:25056321
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (343 Kb) [Save to disk]
  • Biological Unit Coordinates (4pu3.pdb1.gz) 337 Kb
  • LPC: Ligand-Protein Contacts for 4PU3
  • CSU: Contacts of Structural Units for 4PU3
  • Structure Factors (173 Kb)
  • Retrieve 4PU3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4PU3 from S2C, [Save to disk]
  • Re-refined 4pu3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4PU3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4PU3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4PU3, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4pu3_D] [4pu3_P] [4pu3] [4pu3_A] [4pu3_C] [4pu3_Q] [4pu3_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4PU3: [HTH_XRE ] by SMART
    • Other resources with information on 4PU3
  • Community annotation for 4PU3 at PDBWiki (http://pdbwiki.org)

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