OCA Atlas for 4PYU

4PYU

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

Gene
Ontology

Chain	Function	Process	Component
G, S, O, B, K, A
L, H, T, C, P, D

Primary reference

The conserved ubiquitin-like protein Hub1 plays a critical role in splicing in human cells., Ammon T, Mishra SK, Kowalska K, Popowicz GM, Holak TA, Jentsch S, J Mol Cell Biol. 2014 Aug;6(4):312-23. doi: 10.1093/jmcb/mju026. Epub 2014 May, 28. PMID:24872507

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (99 Kb) [Save to disk]

Biological Unit Coordinates (4pyu.pdb1.gz) 17 Kb

Biological Unit Coordinates (4pyu.pdb2.gz) 17 Kb

Biological Unit Coordinates (4pyu.pdb3.gz) 17 Kb

Biological Unit Coordinates (4pyu.pdb4.gz) 17 Kb

Biological Unit Coordinates (4pyu.pdb5.gz) 17 Kb

Biological Unit Coordinates (4pyu.pdb6.gz) 17 Kb

CSU: Contacts of Structural Units for 4PYU

Structure Factors (292 Kb)

Retrieve 4PYU in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4PYU from S2C, [Save to disk]

Re-refined 4pyu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4PYU in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4pyu] [4pyu_A] [4pyu_B] [4pyu_C] [4pyu_D] [4pyu_G] [4pyu_H] [4pyu_K] [4pyu_L] [4pyu_O] [4pyu_P] [4pyu_S] [4pyu_T]

SWISS-PROT database:

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