4Q3L Crystal structure of MGS-M2, an alpha/beta hydrolase enzyme from a Medee basin deep-sea metagenome library date
authors Stogios, P.J., Xu, X., Cui, H., Alcaide, M., Ferrer, M., Savchenko, A.
compound source
symmetry
R_factor
R_Free 0.2554
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.01
ligand GOL enzyme
Primary referencePressure adaptation is linked to thermal adaptation in salt-saturated marine habitats., Alcaide M, Stogios PJ, Lafraya A, Tchigvintsev A, Flick R, Bargiela R, Chernikova TN, Reva ON, Hai T, Leggewie CC, Katzke N, La Cono V, Matesanz R, Jebbar M, Jaeger KE, Yakimov MM, Yakunin AF, Golyshin PN, Golyshina OV, Savchenko A, Ferrer M, Environ Microbiol. 2014 Oct 20. doi: 10.1111/1462-2920.12660. PMID:25330254
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (751 Kb) [Save to disk]
  • Biological Unit Coordinates (4q3l.pdb1.gz) 373 Kb
  • Biological Unit Coordinates (4q3l.pdb2.gz) 373 Kb
  • LPC: Ligand-Protein Contacts for 4Q3L
  • CSU: Contacts of Structural Units for 4Q3L
  • Structure Factors (436 Kb)
  • Retrieve 4Q3L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4Q3L from S2C, [Save to disk]
  • Re-refined 4q3l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4Q3L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4Q3L
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4Q3L, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4q3l_C] [4q3l_B] [4q3l_A] [4q3l_D] [4q3l_F] [4q3l] [4q3l_E] [4q3l_H] [4q3l_G]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4Q3L
  • Community annotation for 4Q3L at PDBWiki (http://pdbwiki.org)

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