4Q4B Crystal structure of LIMP-2 (space group C2221) date
authors Zhao, Y., Ren, J., Padilla-Parra, S., Fry, L.E., Stuart, D.I.
compound source
symmetry
R_factor
R_Free 0.27590
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.82
ligand BMA, MAN, NA, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceLysosome sorting of beta-glucocerebrosidase by LIMP-2 is targeted by the mannose 6-phosphate receptor., Zhao Y, Ren J, Padilla-Parra S, Fry EE, Stuart DI, Nat Commun. 2014 Jul 14;5:4321. doi: 10.1038/ncomms5321. PMID:25027712
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (153 Kb) [Save to disk]
  • Biological Unit Coordinates (4q4b.pdb1.gz) 145 Kb
  • LPC: Ligand-Protein Contacts for 4Q4B
  • CSU: Contacts of Structural Units for 4Q4B
  • Structure Factors (174 Kb)
  • Retrieve 4Q4B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4Q4B from S2C, [Save to disk]
  • Re-refined 4q4b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4Q4B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4Q4B
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4Q4B, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4q4b_A] [4q4b]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4Q4B
  • Community annotation for 4Q4B at PDBWiki (http://pdbwiki.org)

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