OCA Atlas for 4Q6I

4Q6I

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

Gene
Ontology

Chain	Function	Process	Component
I, K, C, J

Primary reference

Neutralizing antibodies to HIV-1 envelope protect more effectively in vivo than those to the CD4 receptor., Pegu A, Yang ZY, Boyington JC, Wu L, Ko SY, Schmidt SD, McKee K, Kong WP, Shi W, Chen X, Todd JP, Letvin NL, Huang J, Nason MC, Hoxie JA, Kwong PD, Connors M, Rao SS, Mascola JR, Nabel GJ, Sci Transl Med. 2014 Jul 2;6(243):243ra88. doi: 10.1126/scitranslmed.3008992. PMID:24990883

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1229 Kb) [Save to disk]

Biological Unit Coordinates (4q6i.pdb1.gz) 310 Kb

Biological Unit Coordinates (4q6i.pdb2.gz) 307 Kb

Biological Unit Coordinates (4q6i.pdb3.gz) 308 Kb

Biological Unit Coordinates (4q6i.pdb4.gz) 309 Kb

CSU: Contacts of Structural Units for 4Q6I

Structure Factors (768 Kb)

Retrieve 4Q6I in mmCIF format [Save to disk]

Re-refined 4q6i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4Q6I in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4q6i] [4q6i_A] [4q6i_B] [4q6i_C] [4q6i_D] [4q6i_E] [4q6i_F] [4q6i_G] [4q6i_H] [4q6i_I] [4q6i_J] [4q6i_K] [4q6i_L]

SWISS-PROT database:

Domains found in 4Q6I: [IG_like] [IGv ] by SMART

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