4QAM Crystal Structure of the RPGR RCC1-like domain in complex with the RPGR-interacting domain of RPGRIP1 date
authors Remans, K., Buerger, M., Vetter, I.R., Wittinghofer, A.
compound source
symmetry
R_factor
R_Free 0.1965
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.83
ligand GOL, MG, MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
B


Primary referenceC2 domains as protein-protein interaction modules in the ciliary transition zone., Remans K, Burger M, Vetter IR, Wittinghofer A, Cell Rep. 2014 Jul 10;8(1):1-9. doi: 10.1016/j.celrep.2014.05.049. Epub 2014 Jun , 26. PMID:24981858
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (188 Kb) [Save to disk]
  • Biological Unit Coordinates (4qam.pdb1.gz) 180 Kb
  • LPC: Ligand-Protein Contacts for 4QAM
  • CSU: Contacts of Structural Units for 4QAM
  • Structure Factors (1078 Kb)
  • Retrieve 4QAM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4QAM from S2C, [Save to disk]
  • Re-refined 4qam structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4QAM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4QAM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4QAM, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4qam_B] [4qam] [4qam_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4QAM
  • Community annotation for 4QAM at PDBWiki (http://pdbwiki.org)

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