4QFR Structure of AMPK in complex with Cl-A769662 activator and STAUROSPORINE inhibitor date
authors Calabrese, M.F., Kurumbail, R.G.
compound source
symmetry
R_factor
R_Free 0.2489
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.34
ligand 32J, ADP, AMP, CL, SO4, STU, TPO enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • histone serine kinase activi...
  • eukaryotic elongation factor...


    • B


    C


    Primary referenceStructural Basis for AMPK Activation: Natural and Synthetic Ligands Regulate Kinase Activity from Opposite Poles by Different Molecular Mechanisms., Calabrese MF, Rajamohan F, Harris MS, Caspers NL, Magyar R, Withka JM, Wang H, Borzilleri KA, Sahasrabudhe PV, Hoth LR, Geoghegan KF, Han S, Brown J, Subashi TA, Reyes AR, Frisbie RK, Ward J, Miller RA, Landro JA, Londregan AT, Carpino PA, Cabral S, Smith AC, Conn EL, Cameron KO, Qiu X, Kurumbail RG, Structure. 2014 Aug 5;22(8):1161-72. doi: 10.1016/j.str.2014.06.009. Epub 2014, Jul 24. PMID:25066137
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (292 Kb) [Save to disk]
  • Biological Unit Coordinates (4qfr.pdb1.gz) 283 Kb
  • Biological Unit Coordinates (4qfr.pdb2.gz) 562 Kb
  • Biological Unit Coordinates (4qfr.pdb3.gz) 563 Kb
  • LPC: Ligand-Protein Contacts for 4QFR
  • CSU: Contacts of Structural Units for 4QFR
  • Structure Factors (421 Kb)
  • Retrieve 4QFR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4QFR from S2C, [Save to disk]
  • Re-refined 4qfr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4QFR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4QFR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4QFR, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4qfr_B] [4qfr] [4qfr_A] [4qfr_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4QFR: [AMPKBI] [CBS] [S_TKc ] by SMART
    • Other resources with information on 4QFR
  • Community annotation for 4QFR at PDBWiki (http://pdbwiki.org)

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