4QNP Crystal structure of the 2009 pandemic H1N1 influenza virus neuraminidase with a neutralizing antibody date
authors Wan, H.Q., Yang, H., Shore, D.A., Garten, R.J., Couzens, L., Gao, J., Jiang, L.L., Carney, P.J., Villanueva, J., Stevens, J., Eichelberger, M.C.
compound source
symmetry
R_factor
R_Free 0.22379
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.80
ligand CA, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


F, L


Primary referenceStructural characterization of a protective epitope spanning A(H1N1)pdm09 influenza virus neuraminidase monomers., Wan H, Yang H, Shore DA, Garten RJ, Couzens L, Gao J, Jiang L, Carney PJ, Villanueva J, Stevens J, Eichelberger MC, Nat Commun. 2015 Feb 10;6:6114. doi: 10.1038/ncomms7114. PMID:25668439
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (522 Kb) [Save to disk]
  • Biological Unit Coordinates (4qnp.pdb1.gz) 2041 Kb
  • LPC: Ligand-Protein Contacts for 4QNP
  • CSU: Contacts of Structural Units for 4QNP
  • Structure Factors (992 Kb)
  • Retrieve 4QNP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4QNP from S2C, [Save to disk]
  • Re-refined 4qnp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4QNP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4QNP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4QNP, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4qnp_F] [4qnp] [4qnp_H] [4qnp_L] [4qnp_E] [4qnp_A] [4qnp_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4QNP: [IG_like] [IGv ] by SMART
    • Other resources with information on 4QNP
  • Community annotation for 4QNP at PDBWiki (http://pdbwiki.org)

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