4QYF CHK1 kinase domain in complex with aminopyrazine compound 13 date
authors Appleton, B., Wu, P.
compound source
symmetry
R_factor
R_Free 0.223
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.15
ligand 3DV enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiscovery of the 1,7-diazacarbazole class of inhibitors of checkpoint kinase 1., Gazzard L, Appleton B, Chapman K, Chen H, Clark K, Drobnick J, Goodacre S, Halladay J, Lyssikatos J, Schmidt S, Sideris S, Wiesmann C, Williams K, Wu P, Yen I, Malek S, Bioorg Med Chem Lett. 2014 Dec 15;24(24):5704-9. doi: 10.1016/j.bmcl.2014.10.063., Epub 2014 Oct 27. PMID:25453805
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk]
  • Biological Unit Coordinates (4qyf.pdb1.gz) 90 Kb
  • LPC: Ligand-Protein Contacts for 4QYF
  • CSU: Contacts of Structural Units for 4QYF
  • Structure Factors (345 Kb)
  • Retrieve 4QYF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4QYF from S2C, [Save to disk]
  • Re-refined 4qyf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4QYF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4QYF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4QYF, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4qyf_A] [4qyf]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4QYF: [S_TKc ] by SMART
    • Other resources with information on 4QYF
  • Community annotation for 4QYF at PDBWiki (http://pdbwiki.org)

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