4QYN The Crystal Structures of holo-wt human Cellular Retinol Binding protein II (hCRBPII) bound to Retinol date
authors Nossoni, Z., Assar, Z., Yapici, I., Nosrati, M., Wang, W., Berbasova, T., Vasileiou, C., Borhan, B., Geiger, H.
compound source
symmetry
R_factor
R_Free 0.21621
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.19
ligand ACT, RTL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructures of holo wild-type human cellular retinol-binding protein II (hCRBPII) bound to retinol and retinal., Nossoni Z, Assar Z, Yapici I, Nosrati M, Wang W, Berbasova T, Vasileiou C, Borhan B, Geiger J, Acta Crystallogr D Biol Crystallogr. 2014 Dec 1;70(Pt 12):3226-32. doi:, 10.1107/S1399004714023839. Epub 2014 Nov 22. PMID:25478840
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • Biological Unit Coordinates (4qyn.pdb1.gz) 28 Kb
  • Biological Unit Coordinates (4qyn.pdb2.gz) 29 Kb
  • LPC: Ligand-Protein Contacts for 4QYN
  • CSU: Contacts of Structural Units for 4QYN
  • Structure Factors (1589 Kb)
  • Retrieve 4QYN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4QYN from S2C, [Save to disk]
  • Re-refined 4qyn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4QYN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4QYN
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4QYN, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4qyn_A] [4qyn_B] [4qyn]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4QYN
  • Community annotation for 4QYN at PDBWiki (http://pdbwiki.org)

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