4R1C Crystal Structure of 3D7 strain Plasmodium falciparum AMA1 date
authors Lim, S.S., Norton, R.S., McGowan, S.
compound source
symmetry
R_factor
R_Free 0.2473
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
Gene PF11
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure and dynamics of apical membrane antigen 1 from Plasmodium falciparum FVO., Lim SS, Yang W, Krishnarjuna B, Kannan Sivaraman K, Chandrashekaran IR, Kass I, MacRaild CA, Devine SM, Debono CO, Anders RF, Scanlon MJ, Scammells PJ, Norton RS, McGowan S, Biochemistry. 2014 Nov 25;53(46):7310-20. doi: 10.1021/bi5012089. Epub 2014 Nov, 14. PMID:25360546
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (198 Kb) [Save to disk]
  • Biological Unit Coordinates (4r1c.pdb1.gz) 101 Kb
  • Biological Unit Coordinates (4r1c.pdb2.gz) 94 Kb
  • CSU: Contacts of Structural Units for 4R1C
  • Structure Factors (2149 Kb)
  • Retrieve 4R1C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4R1C from S2C, [Save to disk]
  • Re-refined 4r1c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4R1C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4R1C
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4R1C, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4r1c_A] [4r1c_B] [4r1c]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4R1C: [AMA-1 ] by SMART
    • Other resources with information on 4R1C
  • Community annotation for 4R1C at PDBWiki (http://pdbwiki.org)

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