4R26 Crystal structure of human Fab PGT124, a broadly neutralizing and potent HIV-1 neutralizing antibody date
authors Garces, F., Kong, L., Wilson, I.A.
compound source
symmetry
R_factor
R_Free 0.2668
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.50
ligand GOL enzyme
Primary referenceStructural Evolution of Glycan Recognition by a Family of Potent HIV Antibodies., Garces F, Sok D, Kong L, McBride R, Kim HJ, Saye-Francisco KF, Julien JP, Hua Y, Cupo A, Moore JP, Paulson JC, Ward AB, Burton DR, Wilson IA, Cell. 2014 Sep 25;159(1):69-79. doi: 10.1016/j.cell.2014.09.009. PMID:25259921
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk]
  • Biological Unit Coordinates (4r26.pdb1.gz) 71 Kb
  • LPC: Ligand-Protein Contacts for 4R26
  • CSU: Contacts of Structural Units for 4R26
  • Structure Factors (232 Kb)
  • Retrieve 4R26 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4R26 from S2C, [Save to disk]
  • Re-refined 4r26 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4R26 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4R26
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4R26, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4r26] [4r26_L] [4r26_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4R26: [IG_like] [IGv ] by SMART
  • Other resources with information on 4R26
  • Community annotation for 4R26 at PDBWiki (http://pdbwiki.org)

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