4R2I The Crystal Structure of STIV B204 complexed with AMP-PNP date
authors Dellas N, Nicolay SJ, Young MJ
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand ANP, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure-based mutagenesis of STIV B204 reveals essential residues in the virion-associated DNA packaging ATPase., Dellas N, Snyder JC, Dills M, Nicolay SJ, Kerchner KM, Brumfield SK, Lawrence CM, Young MJ, J Virol. 2015 Dec 23. pii: JVI.02435-15. PMID:26699645
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (4r2i.pdb1.gz) 36 Kb
  • LPC: Ligand-Protein Contacts for 4R2I
  • CSU: Contacts of Structural Units for 4R2I
  • Structure Factors (674 Kb)
  • Retrieve 4R2I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4R2I from S2C, [Save to disk]
  • Re-refined 4r2i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4R2I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4R2I
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4r2i_A] [4r2i]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4R2I
  • Community annotation for 4R2I at PDBWiki (http://pdbwiki.org)

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