4R2Y Crystal structure of APC11 RING domain date
authors Brown, N.G., Watson, E.R., Weissmann, F., Jarvis, M.A., Vanderlinden, R., Grace, C.R.R., Frye, J.J., Dube, P., Qiao, R., Petzold, G., Cho, S.E., Alsharif, O., Bao, J., Zheng, J., Nourse, A., Kurinov, I., Peters, J.M., Stark, H., Schulman, B.A.
compound source
symmetry
R_factor
R_Free 0.2291
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.75
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceMechanism of Polyubiquitination by Human Anaphase-Promoting Complex: RING Repurposing for Ubiquitin Chain Assembly., Brown NG, Watson ER, Weissmann F, Jarvis MA, VanderLinden R, Grace CR, Frye JJ, Qiao R, Dube P, Petzold G, Cho SE, Alsharif O, Bao J, Davidson IF, Zheng JJ, Nourse A, Kurinov I, Peters JM, Stark H, Schulman BA, Mol Cell. 2014 Oct 8. pii: S1097-2765(14)00716-3. doi:, 10.1016/j.molcel.2014.09.009. PMID:25306923
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (96 Kb) [Save to disk]
  • Biological Unit Coordinates (4r2y.pdb1.gz) 24 Kb
  • Biological Unit Coordinates (4r2y.pdb2.gz) 23 Kb
  • Biological Unit Coordinates (4r2y.pdb3.gz) 25 Kb
  • Biological Unit Coordinates (4r2y.pdb4.gz) 23 Kb
  • Biological Unit Coordinates (4r2y.pdb5.gz) 90 Kb
  • Biological Unit Coordinates (4r2y.pdb6.gz) 91 Kb
  • LPC: Ligand-Protein Contacts for 4R2Y
  • CSU: Contacts of Structural Units for 4R2Y
  • Structure Factors (431 Kb)
  • Retrieve 4R2Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4R2Y from S2C, [Save to disk]
  • Re-refined 4r2y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4R2Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4R2Y
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4R2Y, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4r2y_C] [4r2y] [4r2y_B] [4r2y_D] [4r2y_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4R2Y: [RING ] by SMART
    • Other resources with information on 4R2Y
  • Community annotation for 4R2Y at PDBWiki (http://pdbwiki.org)

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