4R4N Crystal structure of the anti-hiv-1 antibody 2.2c in complex with hiv-1 93ug037 gp120 date
authors Acharya, P., Louder, R., Kwong, P.D.
compound source
symmetry
R_factor
R_Free 0.3281
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.56
ligand DPR, MPT, NAG, NH2, OAS, U2X enzyme
Gene
Ontology
ChainFunctionProcessComponent
S, A, M, P, I, E, B, V


Primary referenceStructural Definition of an Antibody-Dependent Cellular Cytotoxicity (ADCC) Response Implicated in Reduced Risk for HIV-1 Infection., Acharya P, Tolbert WD, Gohain N, Wu X, Yu L, Liu T, Huang W, Huang CC, Do Kwon Y, Louder RK, Luongo TS, McLellan JS, Pancera M, Yang Y, Zhang B, Flinko R, Foulke JS Jr, Sajadi MM, Kamin-Lewis R, Robinson JE, Martin L, Kwong PD, Guan Y, DeVico AL, Lewis GK, Pazgier M, J Virol. 2014 Aug 27. pii: JVI.02194-14. PMID:25165110
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (3046 Kb) [Save to disk]
  • Biological Unit Coordinates (4r4n.pdb1.gz) 391 Kb
  • Biological Unit Coordinates (4r4n.pdb2.gz) 394 Kb
  • Biological Unit Coordinates (4r4n.pdb3.gz) 394 Kb
  • Biological Unit Coordinates (4r4n.pdb4.gz) 387 Kb
  • Biological Unit Coordinates (4r4n.pdb5.gz) 394 Kb
  • Biological Unit Coordinates (4r4n.pdb6.gz) 394 Kb
  • Biological Unit Coordinates (4r4n.pdb7.gz) 392 Kb
  • Biological Unit Coordinates (4r4n.pdb8.gz) 395 Kb
  • LPC: Ligand-Protein Contacts for 4R4N
  • CSU: Contacts of Structural Units for 4R4N
  • Structure Factors (1744 Kb)
  • Retrieve 4R4N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4R4N from S2C, [Save to disk]
  • Re-refined 4r4n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4R4N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4R4N
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4R4N, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4r4n_P] [4r4n_X] [4r4n_Q] [4r4n_s] [4r4n_A] [4r4n_a] [4r4n_e] [4r4n_I] [4r4n_E] [4r4n_F] [4r4n_i] [4r4n_V] [4r4n_m] [4r4n_T] [4r4n_v] [4r4n_U] [4r4n_D] [4r4n_K] [4r4n_b] [4r4n_L] [4r4n_S] [4r4n_J] [4r4n_O] [4r4n] [4r4n_p] [4r4n_R] [4r4n_M] [4r4n_C] [4r4n_W] [4r4n_N] [4r4n_B] [4r4n_H] [4r4n_G]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4R4N: [IG_like] [IGv ] by SMART
    • Other resources with information on 4R4N
  • Community annotation for 4R4N at PDBWiki (http://pdbwiki.org)

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