4R5Y The complex structure of Braf V600E kinase domain with a novel Braf inhibitor date
authors Feng, Y., Peng, H., Zhang, Y., Liu, Y., Wei, M.
compound source
symmetry
R_factor
R_Free 0.3058
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.50
ligand 3K3 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceBGB-283, a Novel RAF Kinase and EGFR Inhibitor, Displays Potent Antitumor Activity in BRAF-Mutated Colorectal Cancers., Tang Z, Yuan X, Du R, Cheung SH, Zhang G, Wei J, Zhao Y, Feng Y, Peng H, Zhang Y, Du Y, Hu X, Gong W, Liu Y, Gao Y, Liu Y, Hao R, Li S, Wang S, Ji J, Zhang L, Li S, Sutton D, Wei M, Zhou C, Wang L, Luo L, Mol Cancer Ther. 2015 Oct;14(10):2187-97. doi: 10.1158/1535-7163.MCT-15-0262., Epub 2015 Jul 24. PMID:26208524
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (86 Kb) [Save to disk]
  • Biological Unit Coordinates (4r5y.pdb1.gz) 41 Kb
  • Biological Unit Coordinates (4r5y.pdb2.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 4R5Y
  • CSU: Contacts of Structural Units for 4R5Y
  • Structure Factors (204 Kb)
  • Retrieve 4R5Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4R5Y from S2C, [Save to disk]
  • Re-refined 4r5y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4R5Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4R5Y
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4r5y_A] [4r5y_B] [4r5y]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4R5Y: [STYKc ] by SMART
    • Other resources with information on 4R5Y
  • Community annotation for 4R5Y at PDBWiki (http://pdbwiki.org)

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