OCA Atlas for 4R6P

4R6P

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

EDO, GAL, IPA, ZZ1

enzyme

Gene
Ontology

Chain	Function	Process	Component
A, E, G, C
B, F, H, D

Primary reference

Jacalin-carbohydrate interactions: distortion of the ligand molecule as a determinant of affinity., Abhinav KV, Sharma K, Swaminathan CP, Surolia A, Vijayan M, Acta Crystallogr D Biol Crystallogr. 2015 Feb;71(Pt 2):324-31. doi:, 10.1107/S139900471402553X. Epub 2015 Jan 23. PMID:25664742

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk]

Biological Unit Coordinates (4r6p.pdb1.gz) 100 Kb

Biological Unit Coordinates (4r6p.pdb2.gz) 52 Kb

Biological Unit Coordinates (4r6p.pdb3.gz) 52 Kb

LPC: Ligand-Protein Contacts for 4R6P

CSU: Contacts of Structural Units for 4R6P

Structure Factors (3491 Kb)

Retrieve 4R6P in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4R6P from S2C, [Save to disk]

Re-refined 4r6p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4R6P in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4r6p] [4r6p_A] [4r6p_B] [4r6p_C] [4r6p_D] [4r6p_E] [4r6p_F] [4r6p_G] [4r6p_H]

SWISS-PROT database:

Domain found in 4R6P: [Jacalin ] by SMART

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