OCA Atlas for 4R6R

4R6R

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

147, EDO, IPA

enzyme

Gene
Ontology

Chain	Function	Process	Component
C, A, E, G
D, F, H, B

Primary reference

Jacalin-carbohydrate interactions: distortion of the ligand molecule as a determinant of affinity., Abhinav KV, Sharma K, Swaminathan CP, Surolia A, Vijayan M, Acta Crystallogr D Biol Crystallogr. 2015 Feb;71(Pt 2):324-31. doi:, 10.1107/S139900471402553X. Epub 2015 Jan 23. PMID:25664742

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (106 Kb) [Save to disk]

Biological Unit Coordinates (4r6r.pdb1.gz) 101 Kb

Biological Unit Coordinates (4r6r.pdb2.gz) 52 Kb

Biological Unit Coordinates (4r6r.pdb3.gz) 52 Kb

LPC: Ligand-Protein Contacts for 4R6R

CSU: Contacts of Structural Units for 4R6R

Structure Factors (6319 Kb)

Retrieve 4R6R in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4R6R from S2C, [Save to disk]

Re-refined 4r6r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4R6R in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4r6r_G] [4r6r_H] [4r6r] [4r6r_A] [4r6r_B] [4r6r_C] [4r6r_D] [4r6r_E] [4r6r_F]

SWISS-PROT database:

Domain found in 4R6R: [Jacalin ] by SMART

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