4R79 Mos1 transposase paired-end complex with left transposon end date
authors Richardson, J.M.
compound source
symmetry
R_factor
R_Free 0.27009
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.10
ligand MN, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • nuclease activity
  • endonuclease activity


  • Primary referenceStructural Basis for the Inverted Repeat Preferences of mariner Transposases., Trubitsyna M, Grey H, Houston DR, Finnegan DJ, Richardson JM, J Biol Chem. 2015 May 22;290(21):13531-40. doi: 10.1074/jbc.M115.636704. Epub, 2015 Apr 13. PMID:25869132
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (183 Kb) [Save to disk]
  • Biological Unit Coordinates (4r79.pdb1.gz) 177 Kb
  • LPC: Ligand-Protein Contacts for 4R79
  • CSU: Contacts of Structural Units for 4R79
  • Structure Factors (2849 Kb)
  • Retrieve 4R79 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4R79 from S2C, [Save to disk]
  • Re-refined 4r79 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4R79 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4R79
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4R79, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4r79_E] [4r79_A] [4r79_F] [4r79_D] [4r79] [4r79_G] [4r79_H] [4r79_C] [4r79_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4R79
  • Community annotation for 4R79 at PDBWiki (http://pdbwiki.org)

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