4R7P Human UDP-glucose pyrophosphorylase isoform 1 in complex with UDP-glucose date
authors Fuehring, J., Cramer, J.T., Schneider, J., Baruch, P., Gerardy-Schahn, R., Fedorov, R.
compound source
symmetry
R_factor
R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.35
ligand ACT, EDO, SO4, UPG, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceA Quaternary Mechanism Enables the Complex Biological Functions of Octameric Human UDP-glucose Pyrophosphorylase, a Key Enzyme in Cell Metabolism., Fuhring JI, Cramer JT, Schneider J, Baruch P, Gerardy-Schahn R, Fedorov R, Sci Rep. 2015 Apr 10;5:9618. doi: 10.1038/srep09618. PMID:25860585
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (674 Kb) [Save to disk]
  • Biological Unit Coordinates (4r7p.pdb1.gz) 1323 Kb
  • LPC: Ligand-Protein Contacts for 4R7P
  • CSU: Contacts of Structural Units for 4R7P
  • Structure Factors (964 Kb)
  • Retrieve 4R7P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4R7P from S2C, [Save to disk]
  • Re-refined 4r7p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4R7P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4R7P
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4R7P, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4r7p_A] [4r7p_D] [4r7p] [4r7p_C] [4r7p_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4R7P
  • Community annotation for 4R7P at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science