4R8A Crystal structure of paFAN1 - 5' flap DNA complex date
authors Cho, Y., Gwon, G.H., Kim, Y.R.
compound source
symmetry
R_factor
R_Free 0.2337
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.20
Gene
Ontology
ChainFunctionProcessComponent
F, A
  • nuclease activity
  • endonuclease activity
  • exonuclease activity
  • phosphodiesterase I activity...
  • 5'-3' exonuclease activity


  • Primary referenceCrystal structure of a Fanconi anemia-associated nuclease homolog bound to 5' flap DNA: basis of interstrand cross-link repair by FAN1., Gwon GH, Kim Y, Liu Y, Watson AT, Jo A, Etheridge TJ, Yuan F, Zhang Y, Kim Y, Carr AM, Cho Y, Genes Dev. 2014 Oct 15;28(20):2276-90. doi: 10.1101/gad.248492.114. PMID:25319828
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (452 Kb) [Save to disk]
  • Biological Unit Coordinates (4r8a.pdb1.gz) 224 Kb
  • Biological Unit Coordinates (4r8a.pdb2.gz) 222 Kb
  • CSU: Contacts of Structural Units for 4R8A
  • Structure Factors (702 Kb)
  • Retrieve 4R8A in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4R8A from S2C, [Save to disk]
  • Re-refined 4r8a structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4R8A in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4R8A
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4R8A, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4r8a_B] [4r8a_H] [4r8a_A] [4r8a_C] [4r8a_G] [4r8a] [4r8a_I] [4r8a_D] [4r8a_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4R8A: [VRR_NUC ] by SMART
  • Other resources with information on 4R8A
  • Community annotation for 4R8A at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science