4RAY Crystal structure of Magnetospirillum gryphiswaldense MSR-1 Apo-Fur date
authors Deng, Z., Liu, Z., Chen, Z.
compound source
symmetry
R_factor
R_Free 0.20815
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.55
ligand FLC, SO4 enzyme
Gene MGMSRV2
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceMechanistic insights into metal ion activation and operator recognition by the ferric uptake regulator., Deng Z, Wang Q, Liu Z, Zhang M, Machado AC, Chiu TP, Feng C, Zhang Q, Yu L, Qi L, Zheng J, Wang X, Huo X, Qi X, Li X, Wu W, Rohs R, Li Y, Chen Z, Nat Commun. 2015 Jul 2;6:7642. doi: 10.1038/ncomms8642. PMID:26134419
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (98 Kb) [Save to disk]
  • Biological Unit Coordinates (4ray.pdb1.gz) 93 Kb
  • Biological Unit Coordinates (4ray.pdb2.gz) 184 Kb
  • LPC: Ligand-Protein Contacts for 4RAY
  • CSU: Contacts of Structural Units for 4RAY
  • Structure Factors (905 Kb)
  • Retrieve 4RAY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4RAY from S2C, [Save to disk]
  • Re-refined 4ray structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4RAY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4RAY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ray_B] [4ray] [4ray_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4RAY
  • Community annotation for 4RAY at PDBWiki (http://pdbwiki.org)

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