4RBO Crystal structure of a Nanog homeobox (NANOG) from Homo sapiens at 3.30 A resolution date
authors JCSG, Joint.Center.for.Structural.Genomics., STEMCELL, Partnership.for.Stem.Cell.Biology.
compound source
symmetry
R_factor
R_Free 0.2682
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.30
Gene NM
Gene
Ontology
ChainFunctionProcessComponent
A, D


Primary referenceStructure-based discovery of NANOG variant with enhanced properties to promote self-renewal and reprogramming of pluripotent stem cells., Hayashi Y, Caboni L, Das D, Yumoto F, Clayton T, Deller MC, Nguyen P, Farr CL, Chiu HJ, Miller MD, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Tomoda K, Conklin BR, Wilson IA, Yamanaka S, Fletterick RJ, Proc Natl Acad Sci U S A. 2015 Mar 30. pii: 201502855. PMID:25825768
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (118 Kb) [Save to disk]
  • Biological Unit Coordinates (4rbo.pdb1.gz) 57 Kb
  • Biological Unit Coordinates (4rbo.pdb2.gz) 56 Kb
  • CSU: Contacts of Structural Units for 4RBO
  • Structure Factors (354 Kb)
  • Retrieve 4RBO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4RBO from S2C, [Save to disk]
  • Re-refined 4rbo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4RBO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4RBO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4RBO, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4rbo_C] [4rbo_A] [4rbo_E] [4rbo_B] [4rbo_F] [4rbo_D] [4rbo]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4RBO: [HOX ] by SMART
    • Other resources with information on 4RBO
  • Community annotation for 4RBO at PDBWiki (http://pdbwiki.org)

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