OCA Atlas for 4RFN

4RFN

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

DPR, MPT, NAG, NH2

enzyme

Gene
Ontology

Chain	Function	Process	Component
G, A

Primary reference

Co-crystal structures of antibody N60-i3 and antibody JR4 in complex with gp120 define more Cluster A epitopes involved in effective antibody-dependent effector function against HIV-1., Gohain N, Tolbert WD, Acharya P, Yu L, Liu T, Zhao P, Orlandi C, Visciano ML, Kamin-Lewis R, Sajadi MM, Martin L, Robinson JE, Kwong PD, DeVico AL, Ray K, Lewis GK, Pazgier M, J Virol. 2015 Jun 17. pii: JVI.01232-15. PMID:26085162

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (522 Kb) [Save to disk]

Biological Unit Coordinates (4rfn.pdb1.gz) 259 Kb

Biological Unit Coordinates (4rfn.pdb2.gz) 258 Kb

LPC: Ligand-Protein Contacts for 4RFN

CSU: Contacts of Structural Units for 4RFN

Structure Factors (811 Kb)

Retrieve 4RFN in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4RFN from S2C, [Save to disk]

Re-refined 4rfn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4RFN in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4rfn] [4rfn_A] [4rfn_B] [4rfn_C] [4rfn_D] [4rfn_G] [4rfn_H] [4rfn_L] [4rfn_M]

SWISS-PROT database:

Domains found in 4RFN: [IG_like] [IGv ] by SMART

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