4RGT 2.0 Angstrom Crystal Structure of Superantigen-like Protein from Staphylococcus aureus in Complex with 3-N-Acetylneuraminyl-N-acetyllactosamine. date
authors Minasov, G., Nocadello, S., Shuvalova, L., Filippova, E.V., Halavaty, A., Dubrovska, I., Bagnoli, F., Falugi, F., Bottomley, M., Grandi, G., Anderson, W.F., CSGID, Center.for.Structural.Genomics.of.Infectious.Diseases.
compound source
symmetry
R_factor
R_Free 0.24704
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
ligand GAL, NAG, PEG, SIA enzyme
Gene SAOUHSC
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (153 Kb) [Save to disk]
  • Biological Unit Coordinates (4rgt.pdb1.gz) 145 Kb
  • LPC: Ligand-Protein Contacts for 4RGT
  • CSU: Contacts of Structural Units for 4RGT
  • Structure Factors (584 Kb)
  • Retrieve 4RGT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4RGT from S2C, [Save to disk]
  • Re-refined 4rgt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4RGT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4RGT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4RGT, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4rgt] [4rgt_B] [4rgt_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4RGT
  • Community annotation for 4RGT at PDBWiki (http://pdbwiki.org)

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