4RHW Crystal structure of Apaf-1 CARD and caspase-9 CARD complex date
authors Hu, Q., Wu, D., Yan, C., Shi, Y.
compound source
symmetry
R_factor
R_Free 0.2262
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.10
ligand CL, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


F, E


Primary referenceMolecular determinants of caspase-9 activation by the Apaf-1 apoptosome., Hu Q, Wu D, Chen W, Yan Z, Yan C, He T, Liang Q, Shi Y, Proc Natl Acad Sci U S A. 2014 Nov 18;111(46):16254-61. doi:, 10.1073/pnas.1418000111. Epub 2014 Oct 13. PMID:25313070
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (201 Kb) [Save to disk]
  • Biological Unit Coordinates (4rhw.pdb1.gz) 196 Kb
  • LPC: Ligand-Protein Contacts for 4RHW
  • CSU: Contacts of Structural Units for 4RHW
  • Structure Factors (776 Kb)
  • Retrieve 4RHW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4RHW from S2C, [Save to disk]
  • Re-refined 4rhw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4RHW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4RHW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4RHW, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4rhw_E] [4rhw_C] [4rhw] [4rhw_A] [4rhw_B] [4rhw_D] [4rhw_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4RHW: [CARD ] by SMART
  • Other resources with information on 4RHW
  • Community annotation for 4RHW at PDBWiki (http://pdbwiki.org)

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