OCA Atlas for 4RKW

4RKW

Crystal structure of DJ-1

date

authors

Liddington, R.C.

compound

source

symmetry

R_factor

R_Free

0.15332

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

1.50

Gene
Ontology

Chain	Function	Process	Component
A	transcription coactivator ac... peroxiredoxin activity glyoxalase (glycolic acid-fo...	synaptic transmission, dopam... negative regulation of prote... positive regulation of pepti... dopamine uptake involved in ... positive regulation of L-dop...

Primary reference

Transnitrosylation from DJ-1 to PTEN attenuates neuronal cell death in parkinson's disease models., Choi MS, Nakamura T, Cho SJ, Han X, Holland EA, Qu J, Petsko GA, Yates JR 3rd, Liddington RC, Lipton SA, J Neurosci. 2014 Nov 5;34(45):15123-31. doi: 10.1523/JNEUROSCI.4751-13.2014. PMID:25378175

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk]

Biological Unit Coordinates (4rkw.pdb1.gz) 135 Kb

CSU: Contacts of Structural Units for 4RKW

Structure Factors (691 Kb)

Retrieve 4RKW in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4RKW from S2C, [Save to disk]

Re-refined 4rkw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4RKW in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4RKW

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4rkw_A] [4rkw]

SWISS-PROT database:

Domain organization of by SWISSPFAM

Other resources with information on 4RKW

Community annotation for 4RKW at PDBWiki (http://pdbwiki.org)

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