4RSU	Immune System	date	Nov 11, 2014
title	Crystal Structure Of The Light And Hvem Complex
authors	W.Liu, U.A.Ramagoal, D.Himmel, J.B.Bonanno, S.G.Nathenson, S.C.Al To-Animals: The Immune Function Network (Ifn), New York Stru Genomics Research Consortium (Nysgrc)
compound		source
Molecule: Tumor Necrosis Factor Ligand Superfamily Member 1 Form; Chain: A, B, C, G, H, I Fragment: Extracellular Domain, Residues 83-240 Synonym: Herpes Virus Entry Mediator Ligand, Hvem-L, Herpes Entry Mediator Ligand, Tumor Necrosis Factor Ligand Superfa Member 14; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Tnfsf14, Hveml, Light, Unq391pro726 Expression_system: Drosophila Expression_system_common: Fruit Flies Expression_system_taxid: 7215 Expression_system_strain: S2 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pmtbiphisv5
Molecule: Tumor Necrosis Factor Receptor Superfamily Member Chain: D, E, F, J, K, L Fragment: Tnfr-Cys 1-3 Repeats, Residues 39-162 Synonym: Herpes Virus Entry Mediator A, Herpesvirus Entry M Hvea, Tumor Necrosis Factor Receptor-Like 2, Tr2; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Tnfrsf14, Hvea, Hvem, Unq329pro509 Expression_system: Drosophila Expression_system_common: Fruit Flies Expression_system_taxid: 7215 Expression_system_strain: S2 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pmtbiphisv5
symmetry	Space Group: P 21 21 21	R_factor 0.188 R_Free 0.231
crystal cell	length a length b length c angle alpha angle beta angle gamma 111.651 113.604 163.279 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	CL, GOL, NAG	enzyme
Gene Ontology	Chain Function Process Component H, A, C, I, G, B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (463 Kb) [Save to disk] Biological Unit Coordinates (4rsu.pdb1.gz) 452 Kb Biological Unit Coordinates (4rsu.pdb2.gz) 225 Kb Biological Unit Coordinates (4rsu.pdb3.gz) 232 Kb LPC: Ligand-Protein Contacts for 4RSU CSU: Contacts of Structural Units for 4RSU Structure Factors (1767 Kb) Retrieve 4RSU in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4RSU from S2C, [Save to disk] Re-refined 4rsu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4RSU in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4RSU

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4RSU, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4rsu_F] [4rsu_K] [4rsu_E] [4rsu_D] [4rsu_H] [4rsu] [4rsu_C] [4rsu_B] [4rsu_I] [4rsu_J] [4rsu_G] [4rsu_L] [4rsu_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 4RSU: [TNF] [TNFR ] by SMART

Other resources with information on 4RSU

Community annotation for 4RSU at PDBWiki (http://pdbwiki.org)

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