4RVN Crystal structure of a Putative Acyl-CoA ligase (BT_0428) from Bacteroides thetaiotaomicron VPI-5482 at 2.20 A resolution date
authors JCSG, Joint.Center.for.Structural.Genomics.
compound source
symmetry
R_factor
R_Free 0.2186
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.20
ligand AMP, COA, EDO, K, MSE, SO4, UNL, ZN enzyme
note 4RVN supersedes 4R1X, 3QOV
Gene BT
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (596 Kb) [Save to disk]
  • Biological Unit Coordinates (4rvn.pdb1.gz) 295 Kb
  • Biological Unit Coordinates (4rvn.pdb2.gz) 293 Kb
  • LPC: Ligand-Protein Contacts for 4RVN
  • CSU: Contacts of Structural Units for 4RVN
  • Structure Factors (7979 Kb)
  • Retrieve 4RVN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4RVN from S2C, [Save to disk]
  • Re-refined 4rvn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4RVN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4RVN
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4RVN, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4rvn_A] [4rvn] [4rvn_B] [4rvn_C] [4rvn_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4RVN
  • Community annotation for 4RVN at PDBWiki (http://pdbwiki.org)

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