4RYA Crystal structure of abc transporter solute binding protein AVI_3567 from AGROBACTERIUM VITIS S4, TARGET EFI-510645, with bound D-mannitol date
authors Patskovsky, Y., Toro, R., Bhosle, R., Obaidi, N.Al., Morisco, L.L., Wasserman, S.R., Chamala, S., Attonito, J.D., Glenn, A.Scott., Chowdhury, S., Lafleur, J., Hillerich, B., Siedel, R.D., Love, J., Whalen, K.L., Gerlt, J.A., Almo, S.C., EFI, Enzyme.Function.Initiative.
compound source
symmetry
R_factor
R_Free 0.16824
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.50
ligand ACT, MTL enzyme
Gene AVI
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (158 Kb) [Save to disk]
  • Biological Unit Coordinates (4rya.pdb1.gz) 154 Kb
  • LPC: Ligand-Protein Contacts for 4RYA
  • CSU: Contacts of Structural Units for 4RYA
  • Structure Factors (3785 Kb)
  • Retrieve 4RYA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4RYA from S2C, [Save to disk]
  • Re-refined 4rya structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4RYA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4RYA
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4RYA, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4rya] [4rya_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4RYA
  • Community annotation for 4RYA at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science