4RYD X-ray structure of human furin in complex with the competitive inhibitor para-guanidinomethyl-Phac-R-Tle-R-Amba date
authors Dahms, S.O., Than, M.E.
compound source
symmetry
R_factor
R_Free 0.2186
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.15
ligand 00S, 2UE, CA, FMT, NA, TBG enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceNovel Furin Inhibitors with Potent Anti-infectious Activity., Hardes K, Becker GL, Lu Y, Dahms SO, Kohler S, Beyer W, Sandvig K, Yamamoto H, Lindberg I, Walz L, von Messling V, Than ME, Garten W, Steinmetzer T, ChemMedChem. 2015 May 14. doi: 10.1002/cmdc.201500103. PMID:25974265
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (492 Kb) [Save to disk]
  • Biological Unit Coordinates (4ryd.pdb1.gz) 88 Kb
  • Biological Unit Coordinates (4ryd.pdb2.gz) 88 Kb
  • Biological Unit Coordinates (4ryd.pdb3.gz) 88 Kb
  • Biological Unit Coordinates (4ryd.pdb4.gz) 88 Kb
  • Biological Unit Coordinates (4ryd.pdb5.gz) 88 Kb
  • Biological Unit Coordinates (4ryd.pdb6.gz) 87 Kb
  • LPC: Ligand-Protein Contacts for 4RYD
  • CSU: Contacts of Structural Units for 4RYD
  • Structure Factors (1125 Kb)
  • Retrieve 4RYD in mmCIF format [Save to disk]
  • Re-refined 4ryd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4RYD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4RYD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4RYD, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ryd_F] [4ryd_B] [4ryd_C] [4ryd_I] [4ryd_H] [4ryd_D] [4ryd_J] [4ryd_E] [4ryd_K] [4ryd_A] [4ryd_L] [4ryd_N] [4ryd]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4RYD
  • Community annotation for 4RYD at PDBWiki (http://pdbwiki.org)

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