4RYG RENIN IN COMPLEXED WITH N-({(3S,4S)-4-[(benzylsulfonyl)amino]pyrrolidin-3-yl}methyl)-4-methoxy-3-(3-methoxypropoxy)-N-(propan-2-yl)benzamide INHIBITOR date
authors Ostermann, N.
compound source
symmetry
R_factor
R_Free 0.2225
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.65
ligand 3ZJ, DMS, NAG, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referencetrans-(3S,4S)-Disubstituted pyrrolidines as inhibitors of the human aspartyl protease renin. Part I: Prime site exploration using an amino linker., Lorthiois E, Cumin F, Ehrhardt C, Kosaka T, Sellner H, Ostermann N, Francotte E, Wagner T, Maibaum J, Bioorg Med Chem Lett. 2015 Apr 15;25(8):1782-6. doi: 10.1016/j.bmcl.2015.02.039. , Epub 2015 Feb 21. PMID:25782742
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (118 Kb) [Save to disk]
  • Biological Unit Coordinates (4ryg.pdb1.gz) 57 Kb
  • Biological Unit Coordinates (4ryg.pdb2.gz) 57 Kb
  • Biological Unit Coordinates (4ryg.pdb3.gz) 324 Kb
  • LPC: Ligand-Protein Contacts for 4RYG
  • CSU: Contacts of Structural Units for 4RYG
  • Structure Factors (696 Kb)
  • Retrieve 4RYG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4RYG from S2C, [Save to disk]
  • Re-refined 4ryg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4RYG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4RYG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4RYG, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ryg_B] [4ryg] [4ryg_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4RYG
  • Community annotation for 4RYG at PDBWiki (http://pdbwiki.org)

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