4S15 Crystal structure of the orphan nuclear receptor RORalpha ligand-binding domain in complex with 4alpha-caboxyl, 4beta-methyl-zymosterol (4ACD8) date
authors Huang, P., Santori, F.R., Littman, D.R., Rastinejad, F.
compound source
symmetry
R_factor
R_Free 0.2133
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand 4D8, GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceIdentification of Natural RORgamma Ligands that Regulate the Development of Lymphoid Cells., Santori FR, Huang P, van de Pavert SA, Douglass EF Jr, Leaver DJ, Haubrich BA, Keber R, Lorbek G, Konijn T, Rosales BN, Rozman D, Horvat S, Rahier A, Mebius RE, Rastinejad F, Nes WD, Littman DR, Cell Metab. 2015 Feb 3;21(2):286-97. doi: 10.1016/j.cmet.2015.01.004. PMID:25651181
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (187 Kb) [Save to disk]
  • Biological Unit Coordinates (4s15.pdb1.gz) 90 Kb
  • Biological Unit Coordinates (4s15.pdb2.gz) 92 Kb
  • LPC: Ligand-Protein Contacts for 4S15
  • CSU: Contacts of Structural Units for 4S15
  • Structure Factors (906 Kb)
  • Retrieve 4S15 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4S15 from S2C, [Save to disk]
  • Re-refined 4s15 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4S15 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4S15
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4S15, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4s15_C] [4s15_A] [4s15_D] [4s15_B] [4s15]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4S15: [HOLI ] by SMART
  • Other resources with information on 4S15
  • Community annotation for 4S15 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science