4S1K Structure of Uranotaenia sapphirina cypovirus (CPV17) polyhedrin at 100 K date
authors Ginn, H.M., Messerschmidt, M., Ji, X., Zhang, H., Axford, D., Gildea, R.J., Winter, G., Brewster, A.S., Hattne, J., Wagner, A., Grimes, J.M., Evans, G., Sauter, N.K., Sutton, G., Stuart, D.I.
compound source
symmetry
R_factor
R_Free 0.19892
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.20
ligand ATP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of CPV17 polyhedrin determined by the improved analysis of serial femtosecond crystallographic data., Ginn HM, Messerschmidt M, Ji X, Zhang H, Axford D, Gildea RJ, Winter G, Brewster AS, Hattne J, Wagner A, Grimes JM, Evans G, Sauter NK, Sutton G, Stuart DI, Nat Commun. 2015 Mar 9;6:6435. doi: 10.1038/ncomms7435. PMID:25751308
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (4s1k.pdb1.gz) 123 Kb
  • LPC: Ligand-Protein Contacts for 4S1K
  • CSU: Contacts of Structural Units for 4S1K
  • Structure Factors (194 Kb)
  • Retrieve 4S1K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4S1K from S2C, [Save to disk]
  • Re-refined 4s1k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4S1K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4S1K
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4S1K, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4s1k] [4s1k_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4S1K
  • Community annotation for 4S1K at PDBWiki (http://pdbwiki.org)

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