4TNL 1.8 A resolution room temperature structure of Thermolysin recorded using an XFEL date
authors Kern, J., Tran, R., Alonso-Mori, R., Koroidov, S., Echols, N., Hattne, J., Ibrahim, M., Gul, S., Laksmono, H., Sierra, R.G., Gildea, R.J., Han, G., Hellmich, J., Lassalle-Kaiser, B., Chatterjee, R., Brewster, A., Stan, C.A., Gloeckner, C., Lampe, A., DiFiore, D., Milathianaki, D., Fry, A.R., Seibert, M.M., Koglin, J.E., Gallo, E., Uhlig, J., Sokaras, D., Weng, T.C., Zwart, P.H., Skinner, D.E., Bogan, M.J., Messerschmidt, M., Glatzel, P., Williams, G.J., Boutet, S., Adams, P.D., Zouni, A., Messinger, J., Sauter, N.K., Bergmann, U., Yano, J., Yachandra, V.K.
compound source
symmetry
R_factor
R_Free 0.232602531993
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.80
ligand CA, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceTaking snapshots of photosynthetic water oxidation using femtosecond X-ray diffraction and spectroscopy., Kern J, Tran R, Alonso-Mori R, Koroidov S, Echols N, Hattne J, Ibrahim M, Gul S, Laksmono H, Sierra RG, Gildea RJ, Han G, Hellmich J, Lassalle-Kaiser B, Chatterjee R, Brewster AS, Stan CA, Glockner C, Lampe A, DiFiore D, Milathianaki D, Fry AR, Seibert MM, Koglin JE, Gallo E, Uhlig J, Sokaras D, Weng TC, Zwart PH, Skinner DE, Bogan MJ, Messerschmidt M, Glatzel P, Williams GJ, Boutet S, Adams PD, Zouni A, Messinger J, Sauter NK, Bergmann U, Yano J, Yachandra VK, Nat Commun. 2014 Jul 9;5:4371. doi: 10.1038/ncomms5371. PMID:25006873
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (103 Kb) [Save to disk]
  • Biological Unit Coordinates (4tnl.pdb1.gz) 97 Kb
  • LPC: Ligand-Protein Contacts for 4TNL
  • CSU: Contacts of Structural Units for 4TNL
  • Structure Factors (1728 Kb)
  • Retrieve 4TNL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4TNL from S2C, [Save to disk]
  • Re-refined 4tnl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4TNL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4TNL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4TNL, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4tnl_A] [4tnl]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4TNL
  • Community annotation for 4TNL at PDBWiki (http://pdbwiki.org)

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