4TQC The co-complex structure of the translation initiation factor eIF4E with the inhibitor 4EGI-1 reveals an allosteric mechanism for dissociating eIF4G date
authors Papadopoulos, E., Jenni, S., Wagner, G.
compound source
symmetry
R_factor
R_Free 0.1941
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.80
ligand 34J, M7G enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of the eukaryotic translation initiation factor eIF4E in complex with 4EGI-1 reveals an allosteric mechanism for dissociating eIF4G., Papadopoulos E, Jenni S, Kabha E, Takrouri KJ, Yi T, Salvi N, Luna RE, Gavathiotis E, Mahalingam P, Arthanari H, Rodriguez-Mias R, Yefidoff-Freedman R, Aktas BH, Chorev M, Halperin JA, Wagner G, Proc Natl Acad Sci U S A. 2014 Aug 5;111(31):E3187-95. doi:, 10.1073/pnas.1410250111. Epub 2014 Jul 21. PMID:25049413
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (205 Kb) [Save to disk]
  • Biological Unit Coordinates (4tqc.pdb1.gz) 97 Kb
  • Biological Unit Coordinates (4tqc.pdb2.gz) 99 Kb
  • LPC: Ligand-Protein Contacts for 4TQC
  • CSU: Contacts of Structural Units for 4TQC
  • Structure Factors (566 Kb)
  • Retrieve 4TQC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4TQC from S2C, [Save to disk]
  • Re-refined 4tqc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4TQC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4TQC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4TQC, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4tqc] [4tqc_A] [4tqc_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4TQC
  • Community annotation for 4TQC at PDBWiki (http://pdbwiki.org)

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