4TRQ Crystal structure of Sac3/Thp1/Sem1 date
authors Hellerschmied, D., Schneider, S., Kohler, A., Clausen, T.
compound source
symmetry
R_factor
R_Free 0.2378
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.10
ligand SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, C


Primary referenceThe Nuclear Pore-Associated TREX-2 Complex Employs Mediator to Regulate Gene Expression., Schneider M, Hellerschmied D, Schubert T, Amlacher S, Vinayachandran V, Reja R, Pugh BF, Clausen T, Kohler A, Cell. 2015 Aug 27;162(5):1016-28. doi: 10.1016/j.cell.2015.07.059. PMID:26317468
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (437 Kb) [Save to disk]
  • Biological Unit Coordinates (4trq.pdb1.gz) 431 Kb
  • LPC: Ligand-Protein Contacts for 4TRQ
  • CSU: Contacts of Structural Units for 4TRQ
  • Structure Factors (690 Kb)
  • Retrieve 4TRQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4TRQ from S2C, [Save to disk]
  • Re-refined 4trq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4TRQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4TRQ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4trq_A] [4trq_D] [4trq_C] [4trq_E] [4trq_F] [4trq_B] [4trq]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4TRQ: [DSS1_SEM1] [PAM ] by SMART
  • Other resources with information on 4TRQ
  • Community annotation for 4TRQ at PDBWiki (http://pdbwiki.org)

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