4TRW Structure of BACE1 complex with a syn-HEA-type inhibitor date
authors Akaji, K., Teruya, K., Akiyama, T., Sanjho, A., Yamashita, E., Nakagawa, A.
compound source
symmetry
R_factor
R_Free 0.2384
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.85
ligand LHE, TIH enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceEvaluation of transition-state mimics in a superior BACE1 cleavage sequence as peptide-mimetic BACE1 inhibitors., Hattori Y, Kobayashi K, Deguchi A, Nohara Y, Akiyama T, Teruya K, Sanjoh A, Nakagawa A, Yamashita E, Akaji K, Bioorg Med Chem. 2015 Sep 1;23(17):5626-40. doi: 10.1016/j.bmc.2015.07.023. Epub , 2015 Jul 21. PMID:26264846
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (386 Kb) [Save to disk]
  • Biological Unit Coordinates (4trw.pdb1.gz) 129 Kb
  • Biological Unit Coordinates (4trw.pdb2.gz) 129 Kb
  • Biological Unit Coordinates (4trw.pdb3.gz) 130 Kb
  • LPC: Ligand-Protein Contacts for 4TRW
  • CSU: Contacts of Structural Units for 4TRW
  • Structure Factors (716 Kb)
  • Retrieve 4TRW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4TRW from S2C, [Save to disk]
  • Re-refined 4trw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4TRW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4TRW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4trw_D] [4trw_B] [4trw_C] [4trw_E] [4trw] [4trw_F] [4trw_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4TRW
  • Community annotation for 4TRW at PDBWiki (http://pdbwiki.org)

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